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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032864 through 18771 annotations produced 2 hits



/// (CG2493 /// DsecGM23324):

Annotation Number : CG2493
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032864
Gbrowse : chr2L:20461584-20463449 (-) // 100.0 //
Probeset : 1629518_at
Accessions : protein= NP_610037;, nucleotide= NM_136193;
Interpro : 0004180 // carboxypeptidase activity // inferred from electronic annotation /// 0004185 // serine-type carboxypeptidase
FlyMine data for FBgn0032864.
BDGP gene expression has embryonic in situ data for CG2493: 46 pix of staining in 11 body parts.
BioGrid reports that CG2493 interacts with CG9654 .
VDRC has 1 RNAi stocks for FBgn0032864 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain103 ± 44 of 4 0.80Down
Head320 ± 134 of 4 2.40Up
Eye455 ± 74 of 4 3.40Up
Thoracicoabdominal ganglion153 ± 44 of 4 1.10Up
Salivary gland73 ± 44 of 4 0.55Down
Crop123 ± 24 of 4 0.90None
Midgut20 ± 12 of 4 0.20Down
Tubule10 ± 11 of 4 0.10Down
Hindgut149 ± 44 of 4 1.10None
Heart773 ± 404 of 4 5.77Up
Fat body715 ± 544 of 4 5.34Up
Ovary134 ± 34 of 4 1.00None
Testis27 ± 14 of 4 0.20Down
Male accessory glands24 ± 42 of 4 0.20Down
Virgin spermatheca945 ± 204 of 4 7.05Up
Mated spermatheca533 ± 404 of 4 3.98Up
Adult carcass307 ± 84 of 4 2.30Up
Larval CNS277 ± 194 of 4 2.07Up
Larval Salivary gland48 ± 34 of 4 0.36Down
Larval midgut33 ± 24 of 4 0.25Down
Larval tubule25 ± 24 of 4 0.20Down
Larval hindgut228 ± 64 of 4 1.70Up
Larval fat body1043 ± 784 of 4 7.80Up
Larval trachea446 ± 324 of 4 3.33Up
Larval carcass312 ± 744 of 4 2.33None
S2 cells (growing)1442 ± 94 of 410.77Up
Whole fly134 ± 44 of 4



/// (CG2493 /// CG3975):

Annotation Number : CG3975
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027559
Gbrowse : chr2L:15252387-15256304 (-) // 100.0 //
Probeset : 1640210_at
Accessions : protein= NP_609743;, nucleotide= NM_135899;
Interpro : 0004185 // serine-type carboxypeptidase activity // inferred from sequence similarity /// 0005515 // protein binding //
FlyMine data for FBgn0027559.
BDGP gene expression has embryonic in situ data for BG:DS07295.3: 4 pix of staining in 1 body parts.
BioGrid reports that CG3975 interacts with CG5846 .
VDRC has 1 RNAi stocks for FBgn0027559 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.60None
Head2 ± 10 of 4 1.60None
Eye0 ± 00 of 4 0.47None
Thoracicoabdominal ganglion9 ± 10 of 4 5.90Up
Salivary gland16 ± 51 of 410.90None
Crop1 ± 00 of 4 1.10None
Midgut14 ± 30 of 4 9.60Up
Tubule3 ± 00 of 4 2.10Up
Hindgut3 ± 10 of 4 2.10None
Heart1 ± 10 of 4 1.19None
Fat body4 ± 20 of 4 2.97None
Ovary1 ± 00 of 4 0.80None
Testis4 ± 10 of 4 2.70None
Male accessory glands3 ± 00 of 4 2.20None
Virgin spermatheca9 ± 30 of 4 6.39None
Mated spermatheca7 ± 20 of 4 4.89None
Adult carcass11 ± 20 of 4 7.30Up
Larval CNS3 ± 20 of 4 2.29None
Larval Salivary gland4 ± 10 of 4 2.77None
Larval midgut8 ± 20 of 4 5.35None
Larval tubule1 ± 00 of 4 0.70None
Larval hindgut2 ± 00 of 4 1.34None
Larval fat body4 ± 10 of 4 2.60None
Larval trachea3 ± 20 of 4 1.98None
Larval carcass2 ± 00 of 4 1.40None
S2 cells (growing)3 ± 00 of 4 2.05None
Whole fly1 ± 00 of 4

Looking for FBgn0032864. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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