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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032867 through 18771 annotations produced 1 hits



(CG15475):

Annotation Number : CG15475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032867
Gbrowse : chr2L:20614617-20615559 (+) // 100.0 //
Probeset : 1631484_at
Accessions : protein= NP_610039;, nucleotide= NM_136195;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032867.
BDGP gene expression has embryonic in situ data for CG15475: 4 pix of staining in 1 body parts.
BioGrid reports that CG15475 interacts with CG5481 CG2746 .
VDRC has 3 RNAi stocks for FBgn0032867 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 00 of 4 0.10Down
Head4 ± 10 of 4 0.10Down
Eye5 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland15 ± 70 of 4 0.22Down
Crop2 ± 10 of 4 0.00Down
Midgut4 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.03Down
Fat body9 ± 70 of 4 0.14Down
Ovary2 ± 00 of 4 0.00Down
Testis847 ± 244 of 412.00Up
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.07Down
Mated spermatheca3 ± 10 of 4 0.05Down
Adult carcass4 ± 00 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.06Down
Larval Salivary gland6 ± 00 of 4 0.10Down
Larval midgut8 ± 20 of 4 0.11Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body62 ± 293 of 4 0.90None
Larval trachea7 ± 50 of 4 0.11Down
Larval carcass4 ± 20 of 4 0.07Down
S2 cells (growing)5 ± 00 of 4 0.08Down
Whole fly70 ± 24 of 4

Looking for FBgn0032867. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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