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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032869 through 18771 annotations produced 1 hits



(CG17470):

Annotation Number : CG17470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032869
Gbrowse : chr2L:20642302-20643244 (-) // 100.0 //
Probeset : 1641727_at
Accessions : protein= NP_610041;, nucleotide= NM_136197;
FlyMine data for FBgn0032869.
BDGP gene expression has embryonic in situ data for CG17470: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0032869 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland17 ± 20 of 4 0.06Down
Crop1 ± 00 of 4 0.00Down
Midgut5 ± 10 of 4 0.00Down
Tubule7 ± 10 of 4 0.00Down
Hindgut3 ± 20 of 4 0.00Down
Heart4 ± 10 of 4 0.01Down
Fat body8 ± 21 of 4 0.03Down
Ovary9 ± 11 of 4 0.00Down
Testis2401 ± 274 of 4 8.20Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca4 ± 10 of 4 0.02Down
Mated spermatheca8 ± 11 of 4 0.03Down
Adult carcass11 ± 11 of 4 0.00Down
Larval CNS12 ± 24 of 4 0.04Down
Larval Salivary gland3 ± 10 of 4 0.01Down
Larval midgut2 ± 00 of 4 0.01Down
Larval tubule6 ± 11 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.01Down
Larval fat body265 ± 1524 of 4 0.90None
Larval trachea9 ± 141 of 4 0.03Down
Larval carcass3 ± 10 of 4 0.01Down
S2 cells (growing)21 ± 14 of 4 0.07Down
Whole fly293 ± 174 of 4

Looking for FBgn0032869. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime