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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032870 through 18771 annotations produced 1 hits



(CG2608):

Annotation Number : CG2608
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032870
Gbrowse : chr2L:20645823-20647381 (+) // 99.26 //
Probeset : 1640158_at
Accessions : protein= NP_610042;, nucleotide= NM_136198;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation
FlyMine data for FBgn0032870.
BDGP gene expression has embryonic in situ data for CG2608: 8 pix of staining in 1 body parts.
BioGrid reports that CG2608 interacts with CG32103 CG4334 .
VDRC has 1 RNAi stocks for FBgn0032870 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain220 ± 64 of 4 1.00None
Head216 ± 54 of 4 1.00None
Eye366 ± 184 of 4 1.65Up
Thoracicoabdominal ganglion245 ± 54 of 4 1.10None
Salivary gland207 ± 114 of 4 0.93None
Crop197 ± 34 of 4 0.90None
Midgut138 ± 44 of 4 0.60Down
Tubule132 ± 44 of 4 0.60Down
Hindgut156 ± 84 of 4 0.70Down
Heart122 ± 134 of 4 0.55Down
Fat body132 ± 174 of 4 0.59Down
Ovary454 ± 44 of 4 2.00Up
Testis55 ± 24 of 4 0.20Down
Male accessory glands123 ± 64 of 4 0.60Down
Virgin spermatheca141 ± 104 of 4 0.63Down
Mated spermatheca153 ± 94 of 4 0.69Down
Adult carcass207 ± 64 of 4 0.90None
Larval CNS251 ± 154 of 4 1.13None
Larval Salivary gland159 ± 74 of 4 0.72Down
Larval midgut146 ± 34 of 4 0.66Down
Larval tubule162 ± 34 of 4 0.70Down
Larval hindgut179 ± 84 of 4 0.81None
Larval fat body85 ± 74 of 4 0.40Down
Larval trachea132 ± 64 of 4 0.59Down
Larval carcass181 ± 114 of 4 0.82None
S2 cells (growing)252 ± 44 of 4 1.14None
Whole fly222 ± 174 of 4

Looking for FBgn0032870. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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