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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032871 through 18771 annotations produced 1 hits


Annotation Number : CG2611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032871
Gbrowse : chr2L:20650193-20650900 (+) // 100.0 //
Probeset : 1639951_at
Accessions : protein= NP_610043;, nucleotide= NM_136199;
FlyMine data for FBgn0032871.
BDGP gene expression has embryonic in situ data for CG2611: 6 pix of staining in 1 body parts.
VDRC has 6 RNAi stocks for FBgn0032871 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 44 of 4 1.30None
Head58 64 of 4 0.90None
Eye54 34 of 4 0.83None
Thoracicoabdominal ganglion83 44 of 4 1.30None
Salivary gland73 34 of 4 1.11None
Crop37 44 of 4 0.60Down
Midgut68 34 of 4 1.00None
Tubule80 14 of 4 1.20Up
Hindgut50 04 of 4 0.80None
Heart89 44 of 4 1.36Up
Fat body87 194 of 4 1.32None
Ovary83 34 of 4 1.30None
Testis58 14 of 4 0.90None
Male accessory glands43 51 of 4 0.70Down
Virgin spermatheca77 64 of 4 1.18None
Mated spermatheca110 44 of 4 1.68Up
Adult carcass75 44 of 4 1.10None
Larval CNS76 124 of 4 1.16None
Larval Salivary gland140 94 of 4 2.12Up
Larval midgut72 54 of 4 1.10None
Larval tubule131 44 of 4 2.00Up
Larval hindgut67 14 of 4 1.02None
Larval fat body287 364 of 4 4.30Up
Larval trachea48 24 of 4 0.74None
Larval carcass103 234 of 4 1.56None
S2 cells (growing)190 54 of 4 2.88Up
Whole fly66 64 of 4

Looking for FBgn0032871. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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