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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032873 through 18771 annotations produced 1 hits



(CG2614):

Annotation Number : CG2614
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032873
Gbrowse : chr2L:20656427-20659220 (+) // 100.0 //
Probeset : 1628241_at
Accessions : protein= NP_610045;, nucleotide= NM_136201;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferr
FlyMine data for FBgn0032873.
VDRC has 2 RNAi stocks for FBgn0032873 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 ± 14 of 4 0.50Down
Head67 ± 24 of 4 0.50Down
Eye54 ± 14 of 4 0.40Down
Thoracicoabdominal ganglion78 ± 34 of 4 0.60Down
Salivary gland100 ± 54 of 4 0.74Down
Crop104 ± 24 of 4 0.80Down
Midgut59 ± 34 of 4 0.40Down
Tubule88 ± 84 of 4 0.70Down
Hindgut82 ± 54 of 4 0.60Down
Heart70 ± 34 of 4 0.52Down
Fat body75 ± 94 of 4 0.56Down
Ovary364 ± 74 of 4 2.70Up
Testis39 ± 24 of 4 0.30Down
Male accessory glands131 ± 64 of 4 1.00None
Virgin spermatheca121 ± 64 of 4 0.90None
Mated spermatheca140 ± 94 of 4 1.04None
Adult carcass68 ± 34 of 4 0.50Down
Larval CNS150 ± 64 of 4 1.11None
Larval Salivary gland119 ± 124 of 4 0.88None
Larval midgut60 ± 14 of 4 0.45Down
Larval tubule83 ± 44 of 4 0.60Down
Larval hindgut106 ± 34 of 4 0.79Down
Larval fat body75 ± 34 of 4 0.60Down
Larval trachea128 ± 274 of 4 0.95None
Larval carcass80 ± 94 of 4 0.59Down
S2 cells (growing)167 ± 74 of 4 1.24Up
Whole fly135 ± 54 of 4

Looking for FBgn0032873. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime