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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032876 through 18771 annotations produced 1 hits



(CG1962):

Annotation Number : CG1962
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032876
Gbrowse : chr2L:20678920-20681844 (-) // 100.0 //
Probeset : 1639807_s_at
Accessions : protein= NP_610049; /// NP_724279;, nucleotide= NM_136205; /// NM_165338;
FlyMine data for FBgn0032876.
BDGP gene expression has embryonic in situ data for CG1962: 86 pix of staining in 9 body parts.
BioGrid reports that CG1962 interacts with CG31029 CG32183 CG5798 CG6415 CG8120 .
VDRC has 1 RNAi stocks for FBgn0032876 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain395 ± 104 of 4 1.60Up
Head182 ± 144 of 4 0.70Down
Eye133 ± 124 of 4 0.54Down
Thoracicoabdominal ganglion375 ± 134 of 4 1.50Up
Salivary gland97 ± 44 of 4 0.39Down
Crop186 ± 44 of 4 0.80Down
Midgut48 ± 34 of 4 0.20Down
Tubule91 ± 74 of 4 0.40Down
Hindgut130 ± 14 of 4 0.50Down
Heart96 ± 44 of 4 0.39Down
Fat body156 ± 304 of 4 0.63Down
Ovary613 ± 34 of 4 2.50Up
Testis31 ± 24 of 4 0.10Down
Male accessory glands148 ± 24 of 4 0.60Down
Virgin spermatheca115 ± 54 of 4 0.46Down
Mated spermatheca145 ± 44 of 4 0.59Down
Adult carcass121 ± 94 of 4 0.50Down
Larval CNS318 ± 134 of 4 1.28Up
Larval Salivary gland96 ± 44 of 4 0.39Down
Larval midgut39 ± 34 of 4 0.16Down
Larval tubule136 ± 64 of 4 0.50Down
Larval hindgut100 ± 84 of 4 0.40Down
Larval fat body202 ± 84 of 4 0.80None
Larval trachea146 ± 124 of 4 0.59Down
Larval carcass78 ± 34 of 4 0.32Down
S2 cells (growing)170 ± 34 of 4 0.69Down
Whole fly248 ± 154 of 4

Looking for FBgn0032876. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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