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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032877 through 18771 annotations produced 1 hits



(CG2617):

Annotation Number : CG2617
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032877
Gbrowse : chr2L:20682369-20683632 (+) // 100.0 //
Probeset : 1635647_at
Accessions : protein= NP_610050;, nucleotide= NM_136206;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0032877.
VDRC has 3 RNAi stocks for FBgn0032877 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 24 of 4 0.50Down
Head42 14 of 4 0.60Down
Eye33 24 of 4 0.44Down
Thoracicoabdominal ganglion41 24 of 4 0.50Down
Salivary gland45 44 of 4 0.60Down
Crop33 14 of 4 0.40Down
Midgut43 24 of 4 0.60Down
Tubule38 24 of 4 0.50Down
Hindgut42 44 of 4 0.50Down
Heart29 34 of 4 0.38Down
Fat body41 44 of 4 0.54Down
Ovary153 44 of 4 2.00Up
Testis88 44 of 4 1.10None
Male accessory glands88 24 of 4 1.10None
Virgin spermatheca38 14 of 4 0.49Down
Mated spermatheca41 14 of 4 0.54Down
Adult carcass40 24 of 4 0.50Down
Larval CNS127 84 of 4 1.65Up
Larval Salivary gland54 24 of 4 0.71Down
Larval midgut32 24 of 4 0.42Down
Larval tubule43 44 of 4 0.60Down
Larval hindgut38 24 of 4 0.50Down
Larval fat body38 54 of 4 0.50Down
Larval trachea98 64 of 4 1.28Up
Larval carcass55 24 of 4 0.72Down
S2 cells (growing)68 74 of 4 0.88None
Whole fly77 54 of 4

Looking for FBgn0032877. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime