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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032878 through 18771 annotations produced 1 hits



(CG9316):

Annotation Number : CG9316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032878
Gbrowse : chr2L:20724204-20726551 (-) // 100.0 //
Probeset : 1625635_at
Accessions : protein= NP_610051;, nucleotide= NM_136207;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032878.
TRiP has 1 RNAi stocks for FBgn0032878 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032878 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head2 ± 00 of 4 0.20Down
Eye2 ± 00 of 4 0.21Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland7 ± 30 of 4 0.60None
Crop0 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.30None
Fat body3 ± 20 of 4 0.26Down
Ovary0 ± 00 of 4 0.00Down
Testis231 ± 134 of 418.20Up
Male accessory glands4 ± 00 of 4 0.30None
Virgin spermatheca1 ± 00 of 4 0.12Down
Mated spermatheca1 ± 00 of 4 0.14Down
Adult carcass2 ± 10 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland1 ± 10 of 4 0.14Down
Larval midgut0 ± 00 of 4 0.06Down
Larval tubule2 ± 00 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.13Down
Larval fat body22 ± 93 of 4 1.80None
Larval trachea2 ± 20 of 4 0.17Down
Larval carcass1 ± 00 of 4 0.13Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly12 ± 33 of 4

Looking for FBgn0032878. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime