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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032879 through 18771 annotations produced 1 hits



(CG9317):

Annotation Number : CG9317
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032879
Gbrowse : chr2L:20727142-20730309 (-) // 100.0 //
Probeset : 1634836_a_at
Accessions : protein= NP_610052; /// NP_724282;, nucleotide= NM_136208; /// NM_165340;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008513 // secondary active organic cation tr
FlyMine data for FBgn0032879.
Homophila reports that CG9317 is a close match (1e-28) to human gene OAT4L;SLC22A12;URAT1 (NP_700357), a gene associated with Hypouricemia, renal, 220150 (3).
VDRC has 2 RNAi stocks for FBgn0032879 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 14 of 4 1.90Up
Head66 ± 64 of 4 6.80Up
Eye167 ± 64 of 417.09Up
Thoracicoabdominal ganglion7 ± 00 of 4 0.80None
Salivary gland27 ± 23 of 4 2.81Up
Crop4 ± 10 of 4 0.50Down
Midgut4 ± 10 of 4 0.50Down
Tubule4 ± 10 of 4 0.50Down
Hindgut5 ± 10 of 4 0.50Down
Heart4 ± 10 of 4 0.45Down
Fat body12 ± 20 of 4 1.27None
Ovary0 ± 00 of 4 0.10Down
Testis3 ± 00 of 4 0.30Down
Male accessory glands10 ± 30 of 4 1.10None
Virgin spermatheca11 ± 11 of 4 1.21None
Mated spermatheca11 ± 01 of 4 1.14None
Adult carcass4 ± 10 of 4 0.50Down
Larval CNS5 ± 20 of 4 0.61Down
Larval Salivary gland25 ± 14 of 4 2.59Up
Larval midgut4 ± 00 of 4 0.46Down
Larval tubule3 ± 00 of 4 0.40Down
Larval hindgut5 ± 00 of 4 0.55Down
Larval fat body2 ± 00 of 4 0.20Down
Larval trachea10 ± 20 of 4 1.07None
Larval carcass3 ± 10 of 4 0.32Down
S2 cells (growing)8 ± 10 of 4 0.82None
Whole fly9 ± 02 of 4

Looking for FBgn0032879. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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