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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032881 through 18771 annotations produced 1 hits



/// (CG9319 /// DsecGM23310):

Annotation Number : CG9319
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032881
Gbrowse : chr2L:20750933-20752340 (-) // 100.0 //
Probeset : 1635645_at
Accessions : protein= NP_610054;, nucleotide= NM_136210;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0032881.
Homophila reports that CG9319 is a close match (4e-39) to human gene AMACR (NP_976316), a gene associated with Alpha-methylacyl-CoA racemase deficiency (3).
VDRC has 1 RNAi stocks for FBgn0032881 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 ± 34 of 4 1.20None
Head194 ± 84 of 4 1.80Up
Eye224 ± 104 of 4 2.10Up
Thoracicoabdominal ganglion128 ± 44 of 4 1.20None
Salivary gland73 ± 24 of 4 0.69Down
Crop362 ± 94 of 4 3.40Up
Midgut152 ± 74 of 4 1.40Up
Tubule264 ± 114 of 4 2.50Up
Hindgut401 ± 54 of 4 3.80Up
Heart254 ± 84 of 4 2.38Up
Fat body359 ± 474 of 4 3.36Up
Ovary82 ± 24 of 4 0.80None
Testis14 ± 14 of 4 0.10Down
Male accessory glands126 ± 64 of 4 1.20None
Virgin spermatheca271 ± 124 of 4 2.54Up
Mated spermatheca274 ± 184 of 4 2.57Up
Adult carcass213 ± 54 of 4 2.00Up
Larval CNS80 ± 24 of 4 0.75None
Larval Salivary gland82 ± 24 of 4 0.77None
Larval midgut120 ± 74 of 4 1.13None
Larval tubule206 ± 144 of 4 1.90Up
Larval hindgut86 ± 64 of 4 0.81None
Larval fat body387 ± 524 of 4 3.60Up
Larval trachea100 ± 84 of 4 0.94None
Larval carcass74 ± 44 of 4 0.69Down
S2 cells (growing)68 ± 44 of 4 0.64Down
Whole fly106 ± 84 of 4

Looking for FBgn0032881. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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