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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032886 through 18771 annotations produced 1 hits



(CG9328):

Annotation Number : CG9328
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032886
Gbrowse : chr2L:20797730-20814046 (+) // 99.75 //
Probeset : 1623571_a_at
Accessions : protein= NP_610059; /// NP_724290;, nucleotide= NM_136215; /// NM_165344;
FlyMine data for FBgn0032886.
BDGP gene expression has embryonic in situ data for CG9328: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0032886 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain680 ± 294 of 4 7.30Up
Head237 ± 134 of 4 2.50Up
Eye486 ± 314 of 4 5.20Up
Thoracicoabdominal ganglion741 ± 224 of 4 7.90Up
Salivary gland6 ± 40 of 4 0.07Down
Crop108 ± 84 of 4 1.20None
Midgut32 ± 14 of 4 0.40Down
Tubule96 ± 174 of 4 1.00None
Hindgut134 ± 34 of 4 1.40Up
Heart86 ± 24 of 4 0.92None
Fat body33 ± 44 of 4 0.36Down
Ovary171 ± 34 of 4 1.80Up
Testis48 ± 34 of 4 0.50Down
Male accessory glands65 ± 34 of 4 0.70Down
Virgin spermatheca12 ± 22 of 4 0.14Down
Mated spermatheca18 ± 22 of 4 0.19Down
Adult carcass34 ± 54 of 4 0.40Down
Larval CNS156 ± 64 of 4 1.67Up
Larval Salivary gland37 ± 54 of 4 0.40Down
Larval midgut36 ± 14 of 4 0.39Down
Larval tubule322 ± 284 of 4 3.40Up
Larval hindgut31 ± 34 of 4 0.33Down
Larval fat body38 ± 34 of 4 0.40Down
Larval trachea47 ± 134 of 4 0.51Down
Larval carcass52 ± 64 of 4 0.56Down
S2 cells (growing)146 ± 94 of 4 1.56Up
Whole fly93 ± 14 of 4

Looking for FBgn0032886. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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