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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032888 through 18771 annotations produced 1 hits



CheB38c (CheB38c):

Annotation Number : CG14405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032888
Gbrowse : chr2L:20820150-20820867 (-) // 100.0 //
Probeset : 1636545_at
Accessions : protein= NP_001163025; /// NP_610061;, nucleotide= NM_001169554; /// NM_136217;
Pathway : 0005615 // extracellular space // inferred from sequence or structural similarity
Interpro : 0008289 // lipid binding // not recorded
FlyMine data for FBgn0032888.
VDRC has 1 RNAi stocks for FBgn0032888 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head5 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.20Down
Salivary gland13 ± 10 of 4 0.34Down
Crop7 ± 10 of 4 0.20Down
Midgut11 ± 11 of 4 0.30Down
Tubule5 ± 00 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart6 ± 01 of 4 0.16Down
Fat body13 ± 20 of 4 0.33Down
Ovary2 ± 00 of 4 0.10Down
Testis5 ± 10 of 4 0.10Down
Male accessory glands12 ± 20 of 4 0.30Down
Virgin spermatheca10 ± 10 of 4 0.25Down
Mated spermatheca9 ± 10 of 4 0.22Down
Adult carcass270 ± 184 of 4 6.70Up
Larval CNS3 ± 10 of 4 0.08Down
Larval Salivary gland6 ± 20 of 4 0.15Down
Larval midgut12 ± 20 of 4 0.30Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut7 ± 10 of 4 0.18Down
Larval fat body10 ± 30 of 4 0.30Down
Larval trachea6 ± 40 of 4 0.15Down
Larval carcass11 ± 00 of 4 0.28Down
S2 cells (growing)7 ± 00 of 4 0.19Down
Whole fly40 ± 24 of 4

Looking for FBgn0032888. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime