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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032894 through 18771 annotations produced 1 hits


(CG14402):

Annotation Number : CG14402
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032894
Gbrowse : chr2L:20849356-20850216 (+) // 100.0 //
Probeset : 1628574_at
Accessions : protein= NP_610066;, nucleotide= NM_136222;
FlyMine data for FBgn0032894.
BDGP gene expression has embryonic in situ data for CG14402: 6 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0032894 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head2 ± 10 of 4 0.00Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.05Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body0 ± 00 of 4 0.02Down
Ovary0 ± 00 of 4 0.00Down
Testis606 ± 184 of 412.80Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 10 of 4 0.04Down
Mated spermatheca1 ± 00 of 4 0.02Down
Adult carcass4 ± 30 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut1 ± 00 of 4 0.02Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 10 of 4 0.04Down
Larval fat body30 ± 141 of 4 0.60None
Larval trachea1 ± 00 of 4 0.03Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly47 ± 34 of 4

Looking for FBgn0032894. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime