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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032896 through 18771 annotations produced 1 hits



(CG14400):

Annotation Number : CG14400
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032896
Gbrowse : chr2L:20857150-20857852 (-) // 100.0 //
Probeset : 1637797_at
Accessions : protein= NP_610068;, nucleotide= NM_136224;
FlyMine data for FBgn0032896.
VDRC has 5 RNAi stocks for FBgn0032896 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 12 of 4 0.20Down
Head250 ± 74 of 4 4.70Up
Eye129 ± 254 of 4 2.41None
Thoracicoabdominal ganglion11 ± 12 of 4 0.20Down
Salivary gland8 ± 40 of 4 0.17Down
Crop11 ± 21 of 4 0.20Down
Midgut3 ± 00 of 4 0.10Down
Tubule10 ± 12 of 4 0.20Down
Hindgut28 ± 24 of 4 0.50None
Heart248 ± 294 of 4 4.62Up
Fat body434 ± 374 of 4 8.08Up
Ovary4 ± 10 of 4 0.10Down
Testis4 ± 12 of 4 0.10Down
Male accessory glands6 ± 20 of 4 0.10Down
Virgin spermatheca197 ± 154 of 4 3.67Up
Mated spermatheca226 ± 164 of 4 4.21Up
Adult carcass226 ± 124 of 4 4.20Up
Larval CNS4 ± 10 of 4 0.08Down
Larval Salivary gland8 ± 11 of 4 0.16Down
Larval midgut9 ± 10 of 4 0.17Down
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut7 ± 11 of 4 0.14Down
Larval fat body51 ± 54 of 4 1.00None
Larval trachea7 ± 42 of 4 0.15Down
Larval carcass7 ± 10 of 4 0.14Down
S2 cells (growing)5 ± 00 of 4 0.10Down
Whole fly53 ± 84 of 4

Looking for FBgn0032896. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime