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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032897 through 18771 annotations produced 1 hits



(CG9336):

Annotation Number : CG9336
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032897
Gbrowse : chr2L:20859168-20861017 (+) // 100.0 //
Probeset : 1627590_at
Accessions : protein= NP_610069;, nucleotide= NM_136225;
FlyMine data for FBgn0032897.
BDGP gene expression has embryonic in situ data for CG9336: 24 pix of staining in 11 body parts.
TRiP has 1 RNAi stocks for FBgn0032897 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032897 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain202 ± 154 of 4 0.20Down
Head2311 ± 544 of 4 2.60Up
Eye1006 ± 494 of 4 1.12None
Thoracicoabdominal ganglion498 ± 164 of 4 0.60Down
Salivary gland3301 ± 2184 of 4 3.67Up
Crop4754 ± 2034 of 4 5.30Up
Midgut128 ± 24 of 4 0.10Down
Tubule66 ± 144 of 4 0.10Down
Hindgut4424 ± 944 of 4 4.90Up
Heart1105 ± 714 of 4 1.23None
Fat body129 ± 164 of 4 0.14Down
Ovary318 ± 74 of 4 0.40Down
Testis758 ± 334 of 4 0.80Down
Male accessory glands5220 ± 2404 of 4 5.80Up
Virgin spermatheca792 ± 564 of 4 0.88None
Mated spermatheca1219 ± 1544 of 4 1.36None
Adult carcass1802 ± 874 of 4 2.00Up
Larval CNS193 ± 414 of 4 0.22Down
Larval Salivary gland578 ± 484 of 4 0.64Down
Larval midgut54 ± 04 of 4 0.06Down
Larval tubule41 ± 74 of 4 0.00Down
Larval hindgut1302 ± 404 of 4 1.45Up
Larval fat body37 ± 43 of 4 0.00Down
Larval trachea3682 ± 2044 of 4 4.10Up
Larval carcass1259 ± 1114 of 4 1.40Up
S2 cells (growing)5 ± 10 of 4 0.01Down
Whole fly898 ± 214 of 4

Looking for FBgn0032897. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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