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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032899 through 18771 annotations produced 1 hits



/// (CG9338 /// DsimCG9338):

Annotation Number : CG9338
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032899
Gbrowse : chr2L:20865226-20867311 (+) // 100.0 //
Probeset : 1638405_at
Accessions : protein= NP_610071;, nucleotide= NM_136227;
FlyMine data for FBgn0032899.
BDGP gene expression has embryonic in situ data for CG9338: 20 pix of staining in 6 body parts.
VDRC has 1 RNAi stocks for FBgn0032899 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain207 ± 104 of 4 0.90None
Head628 ± 314 of 4 2.80Up
Eye383 ± 154 of 4 1.70Up
Thoracicoabdominal ganglion529 ± 244 of 4 2.30Up
Salivary gland546 ± 364 of 4 2.41Up
Crop1914 ± 914 of 4 8.50Up
Midgut51 ± 34 of 4 0.20Down
Tubule18 ± 11 of 4 0.10Down
Hindgut1541 ± 274 of 4 6.80Up
Heart550 ± 244 of 4 2.43Up
Fat body67 ± 94 of 4 0.30Down
Ovary61 ± 14 of 4 0.30Down
Testis73 ± 24 of 4 0.30Down
Male accessory glands1407 ± 1294 of 4 6.20Up
Virgin spermatheca483 ± 174 of 4 2.14Up
Mated spermatheca610 ± 884 of 4 2.70Up
Adult carcass674 ± 444 of 4 3.00Up
Larval CNS861 ± 1714 of 4 3.80Up
Larval Salivary gland522 ± 264 of 4 2.31Up
Larval midgut98 ± 34 of 4 0.44Down
Larval tubule22 ± 32 of 4 0.10Down
Larval hindgut991 ± 194 of 4 4.38Up
Larval fat body33 ± 54 of 4 0.10Down
Larval trachea2500 ± 2764 of 411.04Up
Larval carcass1526 ± 614 of 4 6.74Up
S2 cells (growing)106 ± 24 of 4 0.47Down
Whole fly226 ± 114 of 4

Looking for FBgn0032899. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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