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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032901 through 18771 annotations produced 1 hits



(CG9339):

Annotation Number : CG9339
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032901
Gbrowse : chr2L:20872773-20918912 (-) // 100.0 //
Probeset : 1631094_s_at
Accessions : protein= NP_001163026; /// NP_610073; /// NP_724300; /// NP_724301; /// NP_724302; /// NP_724303; /// NP_724304; /// NP_995738; /// NP_995739;, nucleotide= NM_001169555; /// NM_136229; /// NM_165348; /// NM_165349; /// NM_165350; /// NM_165351; /// NM_165352; /// NM_206016; /// NM_206017;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation
FlyMine data for FBgn0032901.
BDGP gene expression has embryonic in situ data for CG9339: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032901 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain350 ± 124 of 4 2.70Up
Head171 ± 144 of 4 1.30None
Eye323 ± 664 of 4 2.49None
Thoracicoabdominal ganglion243 ± 164 of 4 1.90Up
Salivary gland78 ± 84 of 4 0.61Down
Crop218 ± 94 of 4 1.70Up
Midgut143 ± 94 of 4 1.10None
Tubule144 ± 144 of 4 1.10None
Hindgut463 ± 164 of 4 3.60Up
Heart611 ± 514 of 4 4.70Up
Fat body82 ± 204 of 4 0.63Down
Ovary126 ± 144 of 4 1.00None
Testis17 ± 24 of 4 0.10Down
Male accessory glands36 ± 14 of 4 0.30Down
Virgin spermatheca37 ± 34 of 4 0.29Down
Mated spermatheca45 ± 44 of 4 0.35Down
Adult carcass146 ± 54 of 4 1.10None
Larval CNS118 ± 84 of 4 0.91None
Larval Salivary gland57 ± 34 of 4 0.44Down
Larval midgut76 ± 54 of 4 0.59Down
Larval tubule116 ± 64 of 4 0.90None
Larval hindgut310 ± 194 of 4 2.39Up
Larval fat body125 ± 74 of 4 1.00None
Larval trachea382 ± 244 of 4 2.95Up
Larval carcass222 ± 284 of 4 1.71Up
S2 cells (growing)135 ± 24 of 4 1.05None
Whole fly129 ± 94 of 4

Looking for FBgn0032901. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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