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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032911 through 18771 annotations produced 2 hits



torn and diminished rhabdomeres (tadr):

Annotation Number : CG9264
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032911
Gbrowse : chr2L:21071008-21081053 (+) // 100.0 //
Probeset : 1635585_at
Accessions : protein= NP_610082; /// NP_724308;, nucleotide= NM_136238; /// NM_165354;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0032911.
BDGP gene expression has embryonic in situ data for CG9264: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain135 ± 24 of 4 5.80Up
Head132 ± 34 of 4 5.70Up
Eye332 ± 124 of 414.29Up
Thoracicoabdominal ganglion148 ± 64 of 4 6.40Up
Salivary gland11 ± 30 of 4 0.48Down
Crop28 ± 34 of 4 1.20None
Midgut6 ± 20 of 4 0.30Down
Tubule10 ± 11 of 4 0.40Down
Hindgut24 ± 13 of 4 1.00None
Heart20 ± 24 of 4 0.86None
Fat body3 ± 20 of 4 0.13Down
Ovary3 ± 10 of 4 0.10Down
Testis16 ± 04 of 4 0.70Down
Male accessory glands11 ± 30 of 4 0.50Down
Virgin spermatheca2 ± 00 of 4 0.10Down
Mated spermatheca3 ± 10 of 4 0.16Down
Adult carcass56 ± 64 of 4 2.40Up
Larval CNS24 ± 34 of 4 1.07None
Larval Salivary gland46 ± 140 of 4 2.02None
Larval midgut5 ± 11 of 4 0.22Down
Larval tubule6 ± 00 of 4 0.30Down
Larval hindgut82 ± 94 of 4 3.55Up
Larval fat body6 ± 20 of 4 0.30Down
Larval trachea14 ± 131 of 4 0.62None
Larval carcass12 ± 11 of 4 0.53Down
S2 cells (growing)4 ± 00 of 4 0.21Down
Whole fly23 ± 14 of 4



torn and diminished rhabdomeres (tadr):

Annotation Number : CG9264
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032911
Gbrowse : chr2L:21071008-21081053 (+) // 100.0 //
Probeset : 1626815_a_at
Accessions : protein= NP_610082; /// NP_724308;, nucleotide= NM_136238; /// NM_165354;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0032911.
BDGP gene expression has embryonic in situ data for CG9264: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain128 ± 24 of 4 5.90Up
Head111 ± 44 of 4 5.10Up
Eye362 ± 184 of 416.69Up
Thoracicoabdominal ganglion175 ± 74 of 4 8.10Up
Salivary gland1 ± 00 of 4 0.08Down
Crop21 ± 23 of 4 1.00None
Midgut3 ± 00 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut26 ± 14 of 4 1.20None
Heart30 ± 24 of 4 1.41Up
Fat body1 ± 00 of 4 0.06Down
Ovary0 ± 00 of 4 0.00Down
Testis24 ± 24 of 4 1.10None
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass65 ± 44 of 4 3.00Up
Larval CNS22 ± 24 of 4 1.02None
Larval Salivary gland3 ± 10 of 4 0.14Down
Larval midgut1 ± 00 of 4 0.07Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut80 ± 64 of 4 3.72Up
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea5 ± 71 of 4 0.24Down
Larval carcass7 ± 30 of 4 0.37Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly21 ± 14 of 4

Looking for FBgn0032911. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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