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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032913 through 18771 annotations produced 1 hits



(CG9259):

Annotation Number : CG9259
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032913
Gbrowse : chr2L:21089566-21090835 (+) // 100.0 //
Probeset : 1635498_at
Accessions : protein= NP_610084;, nucleotide= NM_136240;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032913.
BioGrid reports that CG9259 interacts with CG9888 .
VDRC has 2 RNAi stocks for FBgn0032913 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye5 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.00Down
Salivary gland10 ± 11 of 4 0.03Down
Crop7 ± 22 of 4 0.00Down
Midgut8 ± 11 of 4 0.00Down
Tubule7558 ± 2154 of 420.40Up
Hindgut40 ± 134 of 4 0.10Down
Heart16 ± 53 of 4 0.04Down
Fat body77 ± 1361 of 4 0.21Down
Ovary1 ± 00 of 4 0.00Down
Testis13 ± 04 of 4 0.00Down
Male accessory glands12 ± 31 of 4 0.00Down
Virgin spermatheca8 ± 31 of 4 0.02Down
Mated spermatheca7 ± 00 of 4 0.02Down
Adult carcass11 ± 41 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland5 ± 10 of 4 0.01Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule6254 ± 1594 of 416.90Up
Larval hindgut51 ± 164 of 4 0.14Down
Larval fat body7 ± 30 of 4 0.00Down
Larval trachea4 ± 21 of 4 0.01Down
Larval carcass8 ± 14 of 4 0.02Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly370 ± 834 of 4

Looking for FBgn0032913. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime