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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032913 through 18771 annotations produced 1 hits


Annotation Number : CG9259
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032913
Gbrowse : chr2L:21089566-21090835 (+) // 100.0 //
Probeset : 1635498_at
Accessions : protein= NP_610084;, nucleotide= NM_136240;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032913.
BioGrid reports that CG9259 interacts with CG9888 .
VDRC has 2 RNAi stocks for FBgn0032913 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye5 00 of 4 0.01Down
Thoracicoabdominal ganglion4 20 of 4 0.00Down
Salivary gland10 11 of 4 0.03Down
Crop7 22 of 4 0.00Down
Midgut8 11 of 4 0.00Down
Tubule7558 2154 of 420.40Up
Hindgut40 134 of 4 0.10Down
Heart16 53 of 4 0.04Down
Fat body77 1361 of 4 0.21Down
Ovary1 00 of 4 0.00Down
Testis13 04 of 4 0.00Down
Male accessory glands12 31 of 4 0.00Down
Virgin spermatheca8 31 of 4 0.02Down
Mated spermatheca7 00 of 4 0.02Down
Adult carcass11 41 of 4 0.00Down
Larval CNS2 10 of 4 0.01Down
Larval Salivary gland5 10 of 4 0.01Down
Larval midgut1 00 of 4 0.01Down
Larval tubule6254 1594 of 416.90Up
Larval hindgut51 164 of 4 0.14Down
Larval fat body7 30 of 4 0.00Down
Larval trachea4 21 of 4 0.01Down
Larval carcass8 14 of 4 0.02Down
S2 cells (growing)2 00 of 4 0.01Down
Whole fly370 834 of 4

Looking for FBgn0032913. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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