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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032916 through 18771 annotations produced 1 hits



(CG9257):

Annotation Number : CG9257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032916
Gbrowse : chr2L:21102738-21104324 (+) // 99.69 //
Probeset : 1624665_at
Accessions : protein= NP_610087;, nucleotide= NM_136243;
FlyMine data for FBgn0032916.
BioGrid reports that CG9257 interacts with CG9986 .
VDRC has 2 RNAi stocks for FBgn0032916 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain298 34 of 4 2.30Up
Head126 54 of 4 1.00None
Eye156 14 of 4 1.20Up
Thoracicoabdominal ganglion495 154 of 4 3.80Up
Salivary gland187 44 of 4 1.43Up
Crop67 14 of 4 0.50Down
Midgut112 44 of 4 0.90Down
Tubule46 44 of 4 0.40Down
Hindgut56 24 of 4 0.40Down
Heart60 34 of 4 0.46Down
Fat body96 64 of 4 0.74Down
Ovary282 104 of 4 2.20Up
Testis75 24 of 4 0.60Down
Male accessory glands323 54 of 4 2.50Up
Virgin spermatheca144 64 of 4 1.10None
Mated spermatheca159 84 of 4 1.21Up
Adult carcass93 34 of 4 0.70Down
Larval CNS192 104 of 4 1.47Up
Larval Salivary gland697 494 of 4 5.32Up
Larval midgut158 44 of 4 1.21Up
Larval tubule45 24 of 4 0.30Down
Larval hindgut148 54 of 4 1.13None
Larval fat body151 94 of 4 1.20None
Larval trachea162 174 of 4 1.24Up
Larval carcass226 74 of 4 1.73Up
S2 cells (growing)129 44 of 4 0.99None
Whole fly131 54 of 4

Looking for FBgn0032916. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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