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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032919 through 18771 annotations produced 1 hits



(CG9253):

Annotation Number : CG9253
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032919
Gbrowse : chr2L:21143231-21145151 (+) // 100.0 //
Probeset : 1640080_at
Accessions : protein= NP_610090;, nucleotide= NM_136246;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0032919.
BDGP gene expression has embryonic in situ data for CG9253: 15 pix of staining in 22 body parts.
TRiP has 1 RNAi stocks for FBgn0032919 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain238 ± 64 of 4 0.80None
Head190 ± 34 of 4 0.70Down
Eye188 ± 64 of 4 0.65Down
Thoracicoabdominal ganglion364 ± 54 of 4 1.30Up
Salivary gland188 ± 44 of 4 0.65Down
Crop211 ± 44 of 4 0.70Down
Midgut117 ± 94 of 4 0.40Down
Tubule281 ± 354 of 4 1.00None
Hindgut161 ± 64 of 4 0.60Down
Heart257 ± 174 of 4 0.89None
Fat body353 ± 294 of 4 1.22Up
Ovary513 ± 94 of 4 1.80Up
Testis48 ± 14 of 4 0.20Down
Male accessory glands310 ± 94 of 4 1.10None
Virgin spermatheca276 ± 174 of 4 0.96None
Mated spermatheca369 ± 44 of 4 1.28Up
Adult carcass219 ± 124 of 4 0.80Down
Larval CNS480 ± 304 of 4 1.66Up
Larval Salivary gland217 ± 144 of 4 0.76Down
Larval midgut80 ± 94 of 4 0.28Down
Larval tubule61 ± 34 of 4 0.20Down
Larval hindgut177 ± 274 of 4 0.61Down
Larval fat body68 ± 34 of 4 0.20Down
Larval trachea457 ± 604 of 4 1.58Up
Larval carcass253 ± 664 of 4 0.88None
S2 cells (growing)270 ± 44 of 4 0.94None
Whole fly288 ± 174 of 4

Looking for FBgn0032919. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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