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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032923 through 18771 annotations produced 1 hits



(CG9248):

Annotation Number : CG9248
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032923
Gbrowse : chr2L:21158877-21160783 (+) // 100.0 //
Probeset : 1628602_a_at
Accessions : protein= NP_610093; /// NP_724313;, nucleotide= NM_136249; /// NM_165356;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0032923.
BDGP gene expression has embryonic in situ data for CG9248: 8 pix of staining in 1 body parts.
BioGrid reports that CG9248 interacts with CG1034 CG2944 CG3629 CG13806 CG5473 CG32045 CG7948 CG5568 CG15218 CG31679 CG31811 CG6521 CG10571 CG32169 CG1765 .
TRiP has 1 RNAi stocks for FBgn0032923 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032923 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 34 of 4 0.60Down
Head109 ± 24 of 4 0.70Down
Eye113 ± 34 of 4 0.75Down
Thoracicoabdominal ganglion125 ± 14 of 4 0.80Down
Salivary gland233 ± 64 of 4 1.56Up
Crop115 ± 44 of 4 0.80Down
Midgut336 ± 44 of 4 2.20Up
Tubule271 ± 124 of 4 1.80Up
Hindgut155 ± 74 of 4 1.00None
Heart240 ± 74 of 4 1.60Up
Fat body190 ± 24 of 4 1.27Up
Ovary168 ± 54 of 4 1.10None
Testis209 ± 84 of 4 1.40Up
Male accessory glands432 ± 94 of 4 2.90Up
Virgin spermatheca316 ± 104 of 4 2.11Up
Mated spermatheca348 ± 74 of 4 2.32Up
Adult carcass157 ± 24 of 4 1.00None
Larval CNS156 ± 44 of 4 1.04None
Larval Salivary gland190 ± 64 of 4 1.27Up
Larval midgut494 ± 164 of 4 3.29Up
Larval tubule269 ± 54 of 4 1.80Up
Larval hindgut226 ± 104 of 4 1.51Up
Larval fat body374 ± 204 of 4 2.50Up
Larval trachea244 ± 154 of 4 1.63Up
Larval carcass154 ± 84 of 4 1.03None
S2 cells (growing)477 ± 64 of 4 3.18Up
Whole fly150 ± 74 of 4

Looking for FBgn0032923. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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