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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032925 through 18771 annotations produced 1 hits



(CG9246):

Annotation Number : CG9246
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032925
Gbrowse : chr2L:21163610-21166101 (+) // 100.0 //
Probeset : 1637866_at
Accessions : protein= NP_610095;, nucleotide= NM_136251;
Pathway : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0032925.
BDGP gene expression has embryonic in situ data for CG9246: 22 pix of staining in 16 body parts.
VDRC has 2 RNAi stocks for FBgn0032925 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 ± 24 of 4 0.30Down
Head46 ± 64 of 4 0.30Down
Eye30 ± 63 of 4 0.20Down
Thoracicoabdominal ganglion48 ± 14 of 4 0.30Down
Salivary gland124 ± 24 of 4 0.83None
Crop60 ± 24 of 4 0.40Down
Midgut72 ± 24 of 4 0.50Down
Tubule76 ± 74 of 4 0.50Down
Hindgut57 ± 94 of 4 0.40Down
Heart60 ± 84 of 4 0.40Down
Fat body66 ± 114 of 4 0.44Down
Ovary371 ± 44 of 4 2.50Up
Testis28 ± 14 of 4 0.20Down
Male accessory glands135 ± 134 of 4 0.90None
Virgin spermatheca53 ± 54 of 4 0.36Down
Mated spermatheca64 ± 34 of 4 0.43Down
Adult carcass59 ± 34 of 4 0.40Down
Larval CNS185 ± 74 of 4 1.24Up
Larval Salivary gland134 ± 74 of 4 0.90None
Larval midgut79 ± 74 of 4 0.53Down
Larval tubule41 ± 34 of 4 0.30Down
Larval hindgut88 ± 134 of 4 0.59Down
Larval fat body36 ± 23 of 4 0.20Down
Larval trachea164 ± 374 of 4 1.10None
Larval carcass83 ± 184 of 4 0.56Down
S2 cells (growing)179 ± 94 of 4 1.20None
Whole fly149 ± 84 of 4

Looking for FBgn0032925. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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