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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032943 through 18771 annotations produced 1 hits



Tetraspanin 39D (Tsp39D):

Annotation Number : CG8666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032943
Gbrowse : chr2L:21344626-21358273 (+) // 100.0 //
Probeset : 1627334_at
Accessions : protein= NP_523612;, nucleotide= NM_078888;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0032943.
Homophila reports that CG8666 is a close match (7e-18) to human gene A15;MRX58;MXS1;TM4SF2 (NP_004606), a gene associated with Mental retardation, X-linked 58, 300210 (3).
TRiP has 1 RNAi stocks for FBgn0032943 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032943 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain250 234 of 4 9.20Up
Head149 104 of 4 5.40Up
Eye91 74 of 4 3.34Up
Thoracicoabdominal ganglion122 64 of 4 4.50Up
Salivary gland16 23 of 4 0.62Down
Crop104 84 of 4 3.80Up
Midgut23 24 of 4 0.90None
Tubule16 13 of 4 0.60Down
Hindgut52 44 of 4 1.90Up
Heart11 14 of 4 0.42Down
Fat body31 44 of 4 1.16None
Ovary7 14 of 4 0.30Down
Testis6 04 of 4 0.20Down
Male accessory glands28 14 of 4 1.00None
Virgin spermatheca14 14 of 4 0.53Down
Mated spermatheca28 44 of 4 1.02None
Adult carcass20 24 of 4 0.70None
Larval CNS230 454 of 4 8.40Up
Larval Salivary gland11 04 of 4 0.40Down
Larval midgut4 12 of 4 0.16Down
Larval tubule7 03 of 4 0.30Down
Larval hindgut31 34 of 4 1.15None
Larval fat body15 14 of 4 0.60Down
Larval trachea24 74 of 4 0.89None
Larval carcass23 24 of 4 0.85None
S2 cells (growing)126 64 of 4 4.62Up
Whole fly27 14 of 4

Looking for FBgn0032943. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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