FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032949 through 18771 annotations produced 1 hits

(CG3305):

Annotation Number : CG3305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032949
Gbrowse : chr2L:21573377-21577114 (+) // 100.0 //
Probeset : 1637767_at
Accessions : protein= NP_610111;, nucleotide= NM_136267;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0032949.
BioGrid reports that CG3305 interacts with CG5053 CG9415 .
TRiP has 3 RNAi stocks for FBgn0032949 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032949 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1928 ± 27	4 of 4	1.00	None
Head	2446 ± 41	4 of 4	1.30	Up
Eye	3773 ± 120	4 of 4	2.00	Up
Thoracicoabdominal ganglion	2108 ± 61	4 of 4	1.10	Up
Salivary gland	7086 ± 273	4 of 4	3.75	Up
Crop	2656 ± 98	4 of 4	1.40	Up
Midgut	3434 ± 31	4 of 4	1.80	Up
Tubule	5975 ± 259	4 of 4	3.20	Up
Hindgut	3237 ± 51	4 of 4	1.70	Up
Heart	5618 ± 292	4 of 4	2.97	Up
Fat body	3512 ± 188	4 of 4	1.86	Up
Ovary	1834 ± 44	4 of 4	1.00	None
Testis	1232 ± 14	4 of 4	0.70	Down
Male accessory glands	3163 ± 38	4 of 4	1.70	Up
Virgin spermatheca	3926 ± 107	4 of 4	2.08	Up
Mated spermatheca	3572 ± 113	4 of 4	1.89	Up
Adult carcass	2777 ± 60	4 of 4	1.50	Up
Larval CNS	1342 ± 48	4 of 4	0.71	Down
Larval Salivary gland	3200 ± 168	4 of 4	1.69	Up
Larval midgut	4544 ± 64	4 of 4	2.40	Up
Larval tubule	5569 ± 49	4 of 4	2.90	Up
Larval hindgut	3161 ± 94	4 of 4	1.67	Up
Larval fat body	2458 ± 205	4 of 4	1.30	None
Larval trachea	3152 ± 175	4 of 4	1.67	Up
Larval carcass	2190 ± 73	4 of 4	1.16	Up
S2 cells (growing)	2576 ± 15	4 of 4	1.36	Up
Whole fly	1890 ± 32	4 of 4

Looking for FBgn0032949. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720