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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032957 through 18771 annotations produced 2 hits



(CG2225):

Annotation Number : CG2225
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032957
Gbrowse : chr2L:21663805-21671134 (-) // 100.0 //
Probeset : 1627998_s_at
Accessions : protein= NP_001014497; /// NP_610118; /// NP_724355; /// NP_724356; /// NP_995742;, nucleotide= NM_001014497; /// NM_136274; /// NM_165392; /// NM_165393; /// NM_206020;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032957.
BDGP gene expression has embryonic in situ data for CG2225: 10 pix of staining in 4 body parts.
BioGrid reports that CG2225 interacts with CG2258 CG3715 CG3727 .
TRiP has 1 RNAi stocks for FBgn0032957 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032957 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain169 114 of 416.50Up
Head25 24 of 4 2.50Up
Eye32 14 of 4 3.18Up
Thoracicoabdominal ganglion120 64 of 411.80Up
Salivary gland16 13 of 4 1.58Up
Crop31 04 of 4 3.10Up
Midgut10 04 of 4 1.00None
Tubule23 04 of 4 2.30Up
Hindgut13 14 of 4 1.30None
Heart14 44 of 4 1.40None
Fat body13 14 of 4 1.32None
Ovary17 14 of 4 1.70Up
Testis3 01 of 4 0.30Down
Male accessory glands13 22 of 4 1.30None
Virgin spermatheca15 24 of 4 1.51None
Mated spermatheca20 24 of 4 2.01Up
Adult carcass14 23 of 4 1.40None
Larval CNS199 304 of 419.54Up
Larval Salivary gland25 34 of 4 2.45Up
Larval midgut11 22 of 4 1.09None
Larval tubule32 24 of 4 3.10Up
Larval hindgut22 14 of 4 2.18Up
Larval fat body11 03 of 4 1.20None
Larval trachea24 44 of 4 2.40Up
Larval carcass20 14 of 4 2.01Up
S2 cells (growing)57 24 of 4 5.60Up
Whole fly10 14 of 4



(CG2225):

Annotation Number : CG2225
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032957
Gbrowse : chr2L:21663805-21677530 (-) // 100.0 //
Probeset : 1630609_s_at
Accessions : protein= NP_001014497; /// NP_610118; /// NP_724355; /// NP_724356; /// NP_995742;, nucleotide= NM_001014497; /// NM_136274; /// NM_165392; /// NM_165393; /// NM_206020;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032957.
BDGP gene expression has embryonic in situ data for CG2225: 10 pix of staining in 4 body parts.
BioGrid reports that CG2225 interacts with CG2258 CG3715 CG3727 .
TRiP has 1 RNAi stocks for FBgn0032957 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032957 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 114 of 411.30Up
Head13 33 of 4 1.20None
Eye25 64 of 4 2.16None
Thoracicoabdominal ganglion43 84 of 4 3.70Up
Salivary gland17 22 of 4 1.46None
Crop11 13 of 4 1.00None
Midgut8 20 of 4 0.70None
Tubule10 11 of 4 0.90None
Hindgut14 13 of 4 1.30None
Heart5 22 of 4 0.46None
Fat body9 51 of 4 0.77None
Ovary17 04 of 4 1.40Up
Testis17 24 of 4 1.50None
Male accessory glands13 23 of 4 1.20None
Virgin spermatheca15 04 of 4 1.28None
Mated spermatheca19 44 of 4 1.63None
Adult carcass7 20 of 4 0.70None
Larval CNS36 54 of 4 3.10Up
Larval Salivary gland6 21 of 4 0.59None
Larval midgut2 10 of 4 0.17Down
Larval tubule11 13 of 4 1.00None
Larval hindgut5 01 of 4 0.50Down
Larval fat body6 11 of 4 0.60None
Larval trachea24 34 of 4 2.08Up
Larval carcass7 12 of 4 0.60None
S2 cells (growing)28 14 of 4 2.42Up
Whole fly11 13 of 4

Looking for FBgn0032957. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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