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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032966 through 18771 annotations produced 1 hits


Annotation Number : CG1421
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032966
Gbrowse : chr2L:21903061-21903739 (+) // 100.0 //
Probeset : 1630776_at
Accessions : protein= NP_610126;, nucleotide= NM_136282;
FlyMine data for FBgn0032966.
BDGP gene expression has embryonic in situ data for CG1421: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0032966 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head2 10 of 4 0.20Down
Eye3 10 of 4 0.24Down
Thoracicoabdominal ganglion3 10 of 4 0.20Down
Salivary gland2 10 of 4 0.15Down
Crop0 00 of 4 0.00Down
Midgut3 00 of 4 0.20Down
Tubule3 00 of 4 0.20Down
Hindgut2 00 of 4 0.20Down
Heart3 10 of 4 0.21Down
Fat body2 10 of 4 0.18Down
Ovary1 00 of 4 0.10Down
Testis238 44 of 414.50Up
Male accessory glands5 00 of 4 0.30Down
Virgin spermatheca4 00 of 4 0.28Down
Mated spermatheca2 00 of 4 0.13Down
Adult carcass6 20 of 4 0.40Down
Larval CNS1 00 of 4 0.12Down
Larval Salivary gland2 00 of 4 0.13Down
Larval midgut6 11 of 4 0.41Down
Larval tubule3 10 of 4 0.20Down
Larval hindgut0 00 of 4 0.03Down
Larval fat body39 173 of 4 2.40None
Larval trachea3 31 of 4 0.20Down
Larval carcass3 10 of 4 0.22Down
S2 cells (growing)1 00 of 4 0.11Down
Whole fly16 14 of 4

Looking for FBgn0032966. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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