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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032972 through 18771 annotations produced 1 hits


(CG10834):

Annotation Number : CG10834
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032972
Gbrowse : chr2L:22106950-22107244 (-) // 100.0 //
Probeset : 1631751_at
Accessions : protein= NP_610131;, nucleotide= NM_136287;
Pathway : 0030286 // dynein complex // inferred from sequence or structural similarity
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from ele
FlyMine data for FBgn0032972.
VDRC has 1 RNAi stocks for FBgn0032972 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.08Down
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.02Down
Fat body0 ± 00 of 4 0.04Down
Ovary0 ± 00 of 4 0.00Down
Testis430 ± 234 of 417.90Up
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 10 of 4 0.08Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass0 ± 00 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.05Down
Larval Salivary gland6 ± 20 of 4 0.28Down
Larval midgut3 ± 10 of 4 0.13Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.03Down
Larval fat body26 ± 132 of 4 1.10None
Larval trachea3 ± 41 of 4 0.17Down
Larval carcass1 ± 00 of 4 0.06Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly24 ± 34 of 4

Looking for FBgn0032972. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime