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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032973 through 18771 annotations produced 1 hits



(CG6675):

Annotation Number : CG6675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032973
Gbrowse : chr2L:22108963-22110349 (+) // 100.0 //
Probeset : 1635188_at
Accessions : protein= NP_610132;, nucleotide= NM_136288;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0032973.
BDGP gene expression has embryonic in situ data for CG6675: 4 pix of staining in 1 body parts.
Homophila reports that CG6675 is a close match (3e-23) to human gene HDLCQ12;HL;LIPC;LIPH (NP_000227), a gene associated with Hepatic lipase deficiency (3);[High density lipoprotein cholesterol level QTL 12] (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).
VDRC has 1 RNAi stocks for FBgn0032973 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head63 54 of 4 2.10Up
Eye40 24 of 4 1.31Up
Thoracicoabdominal ganglion3 00 of 4 0.10Down
Salivary gland410 204 of 413.48Up
Crop47 22 of 4 1.60Up
Midgut3 10 of 4 0.10Down
Tubule6 10 of 4 0.20Down
Hindgut9 20 of 4 0.30Down
Heart9 11 of 4 0.31Down
Fat body13 13 of 4 0.44Down
Ovary1 00 of 4 0.00Down
Testis181 34 of 4 6.00Up
Male accessory glands4 00 of 4 0.10Down
Virgin spermatheca6 10 of 4 0.22Down
Mated spermatheca7 00 of 4 0.25Down
Adult carcass134 124 of 4 4.40Up
Larval CNS2 20 of 4 0.07Down
Larval Salivary gland13 11 of 4 0.43Down
Larval midgut5 20 of 4 0.16Down
Larval tubule5 10 of 4 0.20Down
Larval hindgut5 10 of 4 0.18Down
Larval fat body47 203 of 4 1.60None
Larval trachea9 14 of 4 0.30Down
Larval carcass12 10 of 4 0.41Down
S2 cells (growing)2 10 of 4 0.09Down
Whole fly30 24 of 4

Looking for FBgn0032973. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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