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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032974 through 18771 annotations produced 1 hits


Annotation Number : CG3651
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032974
Gbrowse : chr2L:22121855-22125120 (+) // 100.0 //
Probeset : 1636769_at
Accessions : protein= NP_610133;, nucleotide= NM_136289;
FlyMine data for FBgn0032974.
BioGrid reports that CG3651 interacts with CG7524 CG5829 .
VDRC has 3 RNAi stocks for FBgn0032974 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain291 34 of 4 1.30Up
Head132 14 of 4 0.60Down
Eye115 74 of 4 0.51Down
Thoracicoabdominal ganglion313 94 of 4 1.40Up
Salivary gland166 174 of 4 0.73Down
Crop175 34 of 4 0.80Down
Midgut135 44 of 4 0.60Down
Tubule181 34 of 4 0.80Down
Hindgut138 14 of 4 0.60Down
Heart106 14 of 4 0.47Down
Fat body91 94 of 4 0.40Down
Ovary511 64 of 4 2.20Up
Testis131 54 of 4 0.60Down
Male accessory glands177 64 of 4 0.80Down
Virgin spermatheca133 64 of 4 0.59Down
Mated spermatheca120 24 of 4 0.53Down
Adult carcass110 54 of 4 0.50Down
Larval CNS374 94 of 4 1.65Up
Larval Salivary gland170 84 of 4 0.75Down
Larval midgut105 34 of 4 0.46Down
Larval tubule170 64 of 4 0.70Down
Larval hindgut132 44 of 4 0.58Down
Larval fat body154 74 of 4 0.70Down
Larval trachea234 104 of 4 1.03None
Larval carcass139 34 of 4 0.61Down
S2 cells (growing)400 44 of 4 1.76Up
Whole fly227 104 of 4

Looking for FBgn0032974. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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