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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033000 through 18771 annotations produced 1 hits



(CG14464):

Annotation Number : CG14464
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033000
Gbrowse : chr2R:716778-717441 (+) // 100.0 //
Probeset : 1640762_at
Accessions : protein= NP_001036466;, nucleotide= NM_001043001;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0033000.
BioGrid reports that CG14464 interacts with CG9173 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain741 ± 64 of 4 1.00None
Head434 ± 214 of 4 0.60Down
Eye897 ± 924 of 4 1.21None
Thoracicoabdominal ganglion868 ± 294 of 4 1.20Up
Salivary gland307 ± 144 of 4 0.42Down
Crop330 ± 184 of 4 0.40Down
Midgut223 ± 54 of 4 0.30Down
Tubule161 ± 64 of 4 0.20Down
Hindgut275 ± 44 of 4 0.40Down
Heart386 ± 204 of 4 0.52Down
Fat body225 ± 214 of 4 0.31Down
Ovary1210 ± 284 of 4 1.60Up
Testis124 ± 14 of 4 0.20Down
Male accessory glands274 ± 154 of 4 0.40Down
Virgin spermatheca324 ± 74 of 4 0.44Down
Mated spermatheca355 ± 224 of 4 0.48Down
Adult carcass189 ± 104 of 4 0.30Down
Larval CNS1060 ± 184 of 4 1.43Up
Larval Salivary gland334 ± 94 of 4 0.45Down
Larval midgut302 ± 134 of 4 0.41Down
Larval tubule346 ± 84 of 4 0.50Down
Larval hindgut347 ± 84 of 4 0.47Down
Larval fat body388 ± 204 of 4 0.50Down
Larval trachea952 ± 1104 of 4 1.29Up
Larval carcass368 ± 164 of 4 0.50Down
S2 cells (growing)480 ± 74 of 4 0.65Down
Whole fly739 ± 194 of 4

Looking for FBgn0033000. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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