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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033005 through 18771 annotations produced 1 hits



(CG3107):

Annotation Number : CG3107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033005
Gbrowse : chr2R:978091-982595 (+) // 100.0 //
Probeset : 1636164_s_at
Accessions : protein= NP_001036470; /// NP_610156; /// NP_724396;, nucleotide= NM_001043005; /// NM_136312; /// NM_165416;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from seq
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inf
FlyMine data for FBgn0033005.
BDGP gene expression has embryonic in situ data for CG3107: 4 pix of staining in 1 body parts.
BioGrid reports that CG3107 interacts with CG7025 .
VDRC has 2 RNAi stocks for FBgn0033005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain560 ± 134 of 4 1.30Up
Head396 ± 294 of 4 0.90None
Eye401 ± 174 of 4 0.95None
Thoracicoabdominal ganglion546 ± 84 of 4 1.30Up
Salivary gland477 ± 134 of 4 1.13Up
Crop509 ± 94 of 4 1.20Up
Midgut393 ± 24 of 4 0.90None
Tubule722 ± 94 of 4 1.70Up
Hindgut409 ± 44 of 4 1.00None
Heart332 ± 114 of 4 0.79Down
Fat body359 ± 64 of 4 0.85Down
Ovary905 ± 54 of 4 2.10Up
Testis323 ± 74 of 4 0.80Down
Male accessory glands470 ± 104 of 4 1.10Up
Virgin spermatheca469 ± 294 of 4 1.11None
Mated spermatheca507 ± 224 of 4 1.20Up
Adult carcass299 ± 124 of 4 0.70Down
Larval CNS647 ± 554 of 4 1.53Up
Larval Salivary gland536 ± 314 of 4 1.27Up
Larval midgut417 ± 104 of 4 0.99None
Larval tubule561 ± 74 of 4 1.30Up
Larval hindgut655 ± 64 of 4 1.55Up
Larval fat body583 ± 514 of 4 1.40Up
Larval trachea414 ± 394 of 4 0.98None
Larval carcass677 ± 164 of 4 1.60Up
S2 cells (growing)473 ± 54 of 4 1.12Up
Whole fly422 ± 114 of 4

Looking for FBgn0033005. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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