FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0033017 through 18771 annotations produced 1 hits

(CG10465):

Annotation Number : CG10465
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033017
Gbrowse : chr2R:1227210-1228496 (-) // 99.68 //
Probeset : 1640138_at
Accessions : protein= NP_610165;, nucleotide= NM_136321;
Pathway : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inf
Interpro : 0005249 // voltage-gated potassium channel activity // inferred from electronic annotation /// 0005515 // protein bindin
FlyMine data for FBgn0033017.
BDGP gene expression has embryonic in situ data for CG10465: 4 pix of staining in 1 body parts.
Homophila reports that CG10465 is a close match (1e-15) to human gene EPM3;KCTD7 (NP_694578), a gene associated with Epilepsy, progressive myoclonic 3, 611726 (3).
BioGrid reports that CG10465 interacts with CG10465 CG1064 CG9968 .
TRiP has 1 RNAi stocks for FBgn0033017 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033017 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	500 ± 8	4 of 4	1.10	None
Head	405 ± 33	4 of 4	0.90	None
Eye	476 ± 7	4 of 4	1.03	None
Thoracicoabdominal ganglion	586 ± 57	4 of 4	1.30	None
Salivary gland	442 ± 24	4 of 4	0.96	None
Crop	540 ± 14	4 of 4	1.20	None
Midgut	392 ± 3	4 of 4	0.80	None
Tubule	705 ± 21	4 of 4	1.50	Up
Hindgut	458 ± 5	4 of 4	1.00	None
Heart	328 ± 9	4 of 4	0.71	Down
Fat body	266 ± 17	4 of 4	0.58	Down
Ovary	900 ± 9	4 of 4	1.90	Up
Testis	410 ± 9	4 of 4	0.90	None
Male accessory glands	461 ± 25	4 of 4	1.00	None
Virgin spermatheca	508 ± 13	4 of 4	1.10	None
Mated spermatheca	499 ± 14	4 of 4	1.08	None
Adult carcass	239 ± 10	4 of 4	0.50	Down
Larval CNS	562 ± 29	4 of 4	1.21	None
Larval Salivary gland	494 ± 12	4 of 4	1.07	None
Larval midgut	354 ± 11	4 of 4	0.76	None
Larval tubule	610 ± 14	4 of 4	1.30	Up
Larval hindgut	478 ± 4	4 of 4	1.03	None
Larval fat body	628 ± 24	4 of 4	1.40	Up
Larval trachea	483 ± 38	4 of 4	1.04	None
Larval carcass	382 ± 7	4 of 4	0.83	None
S2 cells (growing)	472 ± 4	4 of 4	1.02	None
Whole fly	463 ± 42	4 of 4

Looking for FBgn0033017. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720