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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033019 through 18771 annotations produced 1 hits



(CG10395):

Annotation Number : CG10395
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033019
Gbrowse : chr2R:1237997-1239408 (+) // 100.0 //
Probeset : 1629101_a_at
Accessions : protein= NP_610167;, nucleotide= NM_136323;
FlyMine data for FBgn0033019.
BDGP gene expression has embryonic in situ data for CG10395: 4 pix of staining in 1 body parts.
BioGrid reports that CG10395 interacts with CG7424 CG10694 CG1104 CG11354 CG11427 CG13022 CG14025 CG14549 CG15150 CG1676 CG18398 CG2851 CG3225 CG4818 CG6380 CG6819 CG9331 CG9797 CG9902 .
VDRC has 2 RNAi stocks for FBgn0033019 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain262 ± 54 of 4 1.60Up
Head120 ± 104 of 4 0.70Down
Eye114 ± 34 of 4 0.70Down
Thoracicoabdominal ganglion277 ± 114 of 4 1.70Up
Salivary gland101 ± 54 of 4 0.63Down
Crop101 ± 44 of 4 0.60Down
Midgut56 ± 34 of 4 0.40Down
Tubule53 ± 14 of 4 0.30Down
Hindgut71 ± 24 of 4 0.40Down
Heart61 ± 04 of 4 0.38Down
Fat body79 ± 114 of 4 0.49Down
Ovary466 ± 124 of 4 2.90Up
Testis27 ± 14 of 4 0.20Down
Male accessory glands140 ± 94 of 4 0.90None
Virgin spermatheca68 ± 74 of 4 0.42Down
Mated spermatheca65 ± 74 of 4 0.40Down
Adult carcass66 ± 34 of 4 0.40Down
Larval CNS234 ± 164 of 4 1.44Up
Larval Salivary gland82 ± 64 of 4 0.51Down
Larval midgut49 ± 24 of 4 0.30Down
Larval tubule125 ± 24 of 4 0.80Down
Larval hindgut94 ± 64 of 4 0.58Down
Larval fat body88 ± 114 of 4 0.50Down
Larval trachea124 ± 74 of 4 0.77Down
Larval carcass73 ± 24 of 4 0.45Down
S2 cells (growing)112 ± 24 of 4 0.70Down
Whole fly162 ± 94 of 4

Looking for FBgn0033019. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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