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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033021 through 18771 annotations produced 1 hits



(CG10417):

Annotation Number : CG10417
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033021
Gbrowse : chr2R:1247835-1250608 (-) // 99.8 //
Probeset : 1630431_s_at
Accessions : protein= NP_610169; /// NP_724410;, nucleotide= NM_136325; /// NM_165430;
Pathway : 0008287 // protein serine/threonine phosphatase complex // inferred from electronic annotation
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity
FlyMine data for FBgn0033021.
BDGP gene expression has embryonic in situ data for CG10417: 4 pix of staining in 1 body parts.
BioGrid reports that CG10417 interacts with CG40127 .
TRiP has 1 RNAi stocks for FBgn0033021 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033021 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain483 184 of 4 1.20None
Head294 154 of 4 0.70Down
Eye381 204 of 4 0.91None
Thoracicoabdominal ganglion480 114 of 4 1.20Up
Salivary gland315 194 of 4 0.76Down
Crop283 64 of 4 0.70Down
Midgut226 44 of 4 0.50Down
Tubule331 74 of 4 0.80Down
Hindgut262 84 of 4 0.60Down
Heart212 84 of 4 0.51Down
Fat body275 74 of 4 0.66Down
Ovary922 134 of 4 2.20Up
Testis157 64 of 4 0.40Down
Male accessory glands223 44 of 4 0.50Down
Virgin spermatheca370 144 of 4 0.89None
Mated spermatheca393 124 of 4 0.94None
Adult carcass165 64 of 4 0.40Down
Larval CNS825 414 of 4 1.98Up
Larval Salivary gland385 184 of 4 0.93None
Larval midgut236 124 of 4 0.57Down
Larval tubule799 214 of 4 1.90Up
Larval hindgut400 64 of 4 0.96None
Larval fat body216 114 of 4 0.50Down
Larval trachea507 384 of 4 1.22Up
Larval carcass302 124 of 4 0.73Down
S2 cells (growing)422 154 of 4 1.01None
Whole fly417 194 of 4

Looking for FBgn0033021. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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