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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033032 through 18771 annotations produced 1 hits



kune-kune (kune):

Annotation Number : CG1298
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033032
Gbrowse : chr2R:1559276-1560302 (+) // 100.0 //
Probeset : 1639520_at
Accessions : protein= NP_610179;, nucleotide= NM_136335;
Pathway : open tracheal system // inferred from mutant phenotype /// 0060857 // establishment of glial blood-brain barrier // inf
Interpro : 0005918 // septate junction // inferred from direct assay /// 0005918 // septate junction // inferred from sequence or s
FlyMine data for FBgn0033032.
BDGP gene expression has embryonic in situ data for CG1298: 15 pix of staining in 19 body parts.
BioGrid reports that CG1298 interacts with CG33193 .
TRiP has 2 RNAi stocks for FBgn0033032 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033032 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain164 24 of 4 0.70Down
Head251 194 of 4 1.10None
Eye345 74 of 4 1.53Up
Thoracicoabdominal ganglion120 64 of 4 0.50Down
Salivary gland738 384 of 4 3.27Up
Crop327 154 of 4 1.50Up
Midgut111 84 of 4 0.50Down
Tubule115 24 of 4 0.50Down
Hindgut421 64 of 4 1.90Up
Heart105 64 of 4 0.47Down
Fat body73 74 of 4 0.32Down
Ovary255 44 of 4 1.10None
Testis142 124 of 4 0.60Down
Male accessory glands408 234 of 4 1.80Up
Virgin spermatheca115 14 of 4 0.51Down
Mated spermatheca164 134 of 4 0.73Down
Adult carcass169 94 of 4 0.80Down
Larval CNS219 164 of 4 0.97None
Larval Salivary gland463 304 of 4 2.05Up
Larval midgut106 54 of 4 0.47Down
Larval tubule86 24 of 4 0.40Down
Larval hindgut270 164 of 4 1.20None
Larval fat body121 134 of 4 0.50Down
Larval trachea932 344 of 4 4.13Up
Larval carcass286 164 of 4 1.27Up
S2 cells (growing)222 64 of 4 0.99None
Whole fly225 104 of 4

Looking for FBgn0033032. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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