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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033038 through 18771 annotations produced 1 hits



(CG7791):

Annotation Number : CG7791
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033038
Gbrowse : chr2R:1645559-1647896 (-) // 100.0 //
Probeset : 1632180_at
Accessions : protein= NP_610183;, nucleotide= NM_136339;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0033038.
VDRC has 2 RNAi stocks for FBgn0033038 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain230 74 of 4 2.00Up
Head158 74 of 4 1.40Up
Eye128 34 of 4 1.14None
Thoracicoabdominal ganglion265 124 of 4 2.30Up
Salivary gland150 24 of 4 1.33Up
Crop165 64 of 4 1.50Up
Midgut139 34 of 4 1.20Up
Tubule139 114 of 4 1.20Up
Hindgut188 64 of 4 1.70Up
Heart125 54 of 4 1.11None
Fat body128 94 of 4 1.13None
Ovary124 24 of 4 1.10None
Testis53 24 of 4 0.50Down
Male accessory glands128 134 of 4 1.10None
Virgin spermatheca163 24 of 4 1.44Up
Mated spermatheca190 84 of 4 1.69Up
Adult carcass183 104 of 4 1.60Up
Larval CNS212 124 of 4 1.88Up
Larval Salivary gland183 74 of 4 1.62Up
Larval midgut116 74 of 4 1.03None
Larval tubule59 24 of 4 0.50Down
Larval hindgut200 194 of 4 1.78Up
Larval fat body121 104 of 4 1.10None
Larval trachea175 304 of 4 1.55Up
Larval carcass123 44 of 4 1.09None
S2 cells (growing)1366 454 of 412.08Up
Whole fly113 64 of 4

Looking for FBgn0033038. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime