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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033048 through 18771 annotations produced 1 hits


(CG7881):

Annotation Number : CG7881
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033048
Gbrowse : chr2R:1848502-1854341 (-) // 100.0 //
Probeset : 1623229_at
Accessions : protein= NP_610190;, nucleotide= NM_136346;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0033048.
BDGP gene expression has embryonic in situ data for CG7881: 8 pix of staining in 2 body parts.
Homophila reports that CG7881 is a close match (1e-52) to human gene SIASD;SLC17A5;SLD (NP_036566), a gene associated with Salla disease, 604369 (3);Sialic acid storage disorder, infantile, 269920 (3).
VDRC has 2 RNAi stocks for FBgn0033048 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head36 ± 34 of 4 0.60Down
Eye2 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland11 ± 30 of 4 0.17Down
Crop1 ± 00 of 4 0.00Down
Midgut199 ± 294 of 4 3.10Up
Tubule1497 ± 74 of 423.30Up
Hindgut92 ± 34 of 4 1.40Up
Heart2 ± 00 of 4 0.03Down
Fat body6 ± 40 of 4 0.09Down
Ovary5 ± 11 of 4 0.10Down
Testis4 ± 10 of 4 0.10Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.05Down
Mated spermatheca3 ± 10 of 4 0.05Down
Adult carcass9 ± 41 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut285 ± 344 of 4 4.45Up
Larval tubule234 ± 144 of 4 3.60Up
Larval hindgut118 ± 184 of 4 1.84None
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea3 ± 20 of 4 0.05Down
Larval carcass3 ± 00 of 4 0.05Down
S2 cells (growing)2 ± 10 of 4 0.05Down
Whole fly64 ± 64 of 4

Looking for FBgn0033048. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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