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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033056 through 18771 annotations produced 1 hits


/// (CG7856 /// DsecGM16485):

Annotation Number : CG7856
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033056
Gbrowse : chr2R:1944861-1947063 (-) // 100.0 //
Probeset : 1630368_at
Accessions : protein= NP_610198;, nucleotide= NM_136354;
FlyMine data for FBgn0033056.
BioGrid reports that CG7856 interacts with CG7911 CG9173 CG7954 CG8159 CG8642 CG8813 CG8854 CG9083 CG9539 .
VDRC has 3 RNAi stocks for FBgn0033056 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland7 ± 10 of 4 0.20Down
Crop0 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut4 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.06Down
Fat body3 ± 10 of 4 0.08Down
Ovary1 ± 00 of 4 0.00Down
Testis681 ± 174 of 417.20Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.06Down
Mated spermatheca0 ± 00 of 4 0.02Down
Adult carcass5 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.02Down
Larval Salivary gland3 ± 10 of 4 0.08Down
Larval midgut1 ± 00 of 4 0.05Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.07Down
Larval fat body59 ± 294 of 4 1.50None
Larval trachea2 ± 20 of 4 0.07Down
Larval carcass2 ± 00 of 4 0.07Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly39 ± 14 of 4

Looking for FBgn0033056. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime