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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033059 through 18771 annotations produced 1 hits



(CG7845):

Annotation Number : CG7845
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033059
Gbrowse : chr2R:1962338-1963882 (-) // 100.0 //
Probeset : 1624113_at
Accessions : protein= NP_610200;, nucleotide= NM_136356;
FlyMine data for FBgn0033059.
BioGrid reports that CG7845 interacts with CG9429 .
VDRC has 1 RNAi stocks for FBgn0033059 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 ± 24 of 4 0.50Down
Head76 ± 14 of 4 0.50Down
Eye64 ± 64 of 4 0.44Down
Thoracicoabdominal ganglion73 ± 24 of 4 0.50Down
Salivary gland90 ± 64 of 4 0.61Down
Crop94 ± 24 of 4 0.60Down
Midgut78 ± 14 of 4 0.50Down
Tubule65 ± 94 of 4 0.40Down
Hindgut70 ± 34 of 4 0.50Down
Heart67 ± 54 of 4 0.46Down
Fat body81 ± 44 of 4 0.55Down
Ovary263 ± 44 of 4 1.80Up
Testis24 ± 04 of 4 0.20Down
Male accessory glands210 ± 124 of 4 1.40Up
Virgin spermatheca58 ± 34 of 4 0.39Down
Mated spermatheca78 ± 24 of 4 0.54Down
Adult carcass65 ± 44 of 4 0.40Down
Larval CNS198 ± 94 of 4 1.35Up
Larval Salivary gland170 ± 124 of 4 1.16None
Larval midgut58 ± 54 of 4 0.40Down
Larval tubule38 ± 24 of 4 0.30Down
Larval hindgut89 ± 124 of 4 0.61Down
Larval fat body28 ± 33 of 4 0.20Down
Larval trachea240 ± 434 of 4 1.64Up
Larval carcass123 ± 284 of 4 0.84None
S2 cells (growing)198 ± 14 of 4 1.35Up
Whole fly146 ± 74 of 4

Looking for FBgn0033059. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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