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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033061 through 18771 annotations produced 1 hits



(CG14590):

Annotation Number : CG14590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033061
Gbrowse : chr2R:1966145-1968077 (-) // 99.73 //
Probeset : 1630702_at
Accessions : protein= NP_610202;, nucleotide= NM_136358;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // in
FlyMine data for FBgn0033061.
BDGP gene expression has embryonic in situ data for CG14590: 2 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0033061 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 1.20None
Head14 24 of 4 1.50None
Eye5 00 of 4 0.63Down
Thoracicoabdominal ganglion13 24 of 4 1.40None
Salivary gland12 51 of 4 1.33None
Crop33 24 of 4 3.50Up
Midgut18 14 of 4 2.00Up
Tubule8 00 of 4 0.90None
Hindgut40 24 of 4 4.20Up
Heart16 14 of 4 1.70Up
Fat body9 10 of 4 0.98None
Ovary2 00 of 4 0.30Down
Testis19 14 of 4 2.10Up
Male accessory glands8 20 of 4 0.80None
Virgin spermatheca7 10 of 4 0.77None
Mated spermatheca9 21 of 4 0.97None
Adult carcass27 14 of 4 2.90Up
Larval CNS7 02 of 4 0.80None
Larval Salivary gland6 10 of 4 0.69None
Larval midgut20 23 of 4 2.09Up
Larval tubule6 10 of 4 0.70None
Larval hindgut30 44 of 4 3.16Up
Larval fat body25 64 of 4 2.70None
Larval trachea6 20 of 4 0.64None
Larval carcass22 04 of 4 2.32Up
S2 cells (growing)8 01 of 4 0.85None
Whole fly9 12 of 4

Looking for FBgn0033061. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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