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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033062 through 18771 annotations produced 1 hits



(Ars2):

Annotation Number : CG7843
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033062
Gbrowse : chr2R:1968332-1973125 (-) // 100.0 //
Probeset : 1636949_s_at
Accessions : protein= NP_610203; /// NP_724453; /// NP_724454;, nucleotide= NM_136359; /// NM_165458; /// NM_165459;
Pathway : via spliceosome // inferred by curator /// 0016246 // RNA interference // inferred from mutant phenotype /// 0031047 //
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0071011 // precatalytic spliceosome // inferred from direc
FlyMine data for FBgn0033062.
BioGrid reports that CG7843 interacts with CG9573 .
TRiP has 2 RNAi stocks for FBgn0033062 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033062 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain245 ± 104 of 4 1.60Up
Head97 ± 74 of 4 0.60Down
Eye116 ± 64 of 4 0.75Down
Thoracicoabdominal ganglion192 ± 94 of 4 1.20Up
Salivary gland170 ± 144 of 4 1.09None
Crop136 ± 44 of 4 0.90None
Midgut114 ± 44 of 4 0.70Down
Tubule161 ± 74 of 4 1.00None
Hindgut141 ± 54 of 4 0.90None
Heart67 ± 64 of 4 0.43Down
Fat body60 ± 64 of 4 0.39Down
Ovary406 ± 84 of 4 2.60Up
Testis44 ± 24 of 4 0.30Down
Male accessory glands261 ± 104 of 4 1.70Up
Virgin spermatheca134 ± 74 of 4 0.86None
Mated spermatheca140 ± 34 of 4 0.90None
Adult carcass80 ± 34 of 4 0.50Down
Larval CNS351 ± 344 of 4 2.24Up
Larval Salivary gland282 ± 74 of 4 1.80Up
Larval midgut80 ± 74 of 4 0.51Down
Larval tubule123 ± 54 of 4 0.80Down
Larval hindgut110 ± 44 of 4 0.71Down
Larval fat body92 ± 94 of 4 0.60Down
Larval trachea199 ± 254 of 4 1.28Up
Larval carcass120 ± 84 of 4 0.77Down
S2 cells (growing)177 ± 34 of 4 1.13None
Whole fly156 ± 84 of 4

Looking for FBgn0033062. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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