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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0033063 through 18771 annotations produced 1 hits


(CG14589):

Annotation Number : CG14589
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033063
Gbrowse : chr2R:2024894-2025956 (+) // 100.0 //
Probeset : 1641103_at
Accessions : protein= NP_610204;, nucleotide= NM_136360;
FlyMine data for FBgn0033063.
BDGP gene expression has embryonic in situ data for CG14589: 4 pix of staining in 1 body parts.
BioGrid reports that CG14589 interacts with CG2944 CG18001 CG9159 CG9285 CG6817 CG9042 Dmel CR32477 .
VDRC has 2 RNAi stocks for FBgn0033063 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 11 of 4 0.10Down
Head10 ± 00 of 4 0.10Down
Eye8 ± 20 of 4 0.08Down
Thoracicoabdominal ganglion12 ± 10 of 4 0.10Down
Salivary gland18 ± 40 of 4 0.18Down
Crop13 ± 00 of 4 0.10Down
Midgut6 ± 20 of 4 0.10Down
Tubule9 ± 10 of 4 0.10Down
Hindgut25 ± 30 of 4 0.20Down
Heart8 ± 30 of 4 0.08Down
Fat body15 ± 22 of 4 0.15Down
Ovary4 ± 10 of 4 0.00Down
Testis1070 ± 324 of 410.20Up
Male accessory glands14 ± 40 of 4 0.10Down
Virgin spermatheca7 ± 01 of 4 0.07Down
Mated spermatheca8 ± 10 of 4 0.08Down
Adult carcass15 ± 40 of 4 0.10Down
Larval CNS9 ± 00 of 4 0.09Down
Larval Salivary gland17 ± 10 of 4 0.17Down
Larval midgut12 ± 10 of 4 0.11Down
Larval tubule14 ± 00 of 4 0.10Down
Larval hindgut8 ± 00 of 4 0.08Down
Larval fat body166 ± 724 of 4 1.60None
Larval trachea11 ± 70 of 4 0.11Down
Larval carcass8 ± 10 of 4 0.08Down
S2 cells (growing)12 ± 00 of 4 0.12Down
Whole fly104 ± 74 of 4

Looking for FBgn0033063. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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