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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033065 through 18771 annotations produced 1 hits



Cyp6w1 (Cyp6w1):

Annotation Number : CG8345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033065
Gbrowse : chr2R:2061200-2062947 (+) // 100.0 //
Probeset : 1634143_at
Accessions : protein= NP_610206;, nucleotide= NM_136362;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0033065.
Homophila reports that CG8345 is a close match (9e-11) to human gene CYP27B1;PDDR;VDD1 (NP_000776), a gene associated with Vitamin D-dependent rickets, type I, 264700 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain274 94 of 4 1.10None
Head1436 1454 of 4 5.90Up
Eye535 614 of 4 2.20Up
Thoracicoabdominal ganglion384 54 of 4 1.60Up
Salivary gland17 21 of 4 0.07Down
Crop76 84 of 4 0.30Down
Midgut16 23 of 4 0.10Down
Tubule31 53 of 4 0.10Down
Hindgut171 174 of 4 0.70None
Heart2029 964 of 4 8.36Up
Fat body2831 4144 of 411.66Up
Ovary2 10 of 4 0.00Down
Testis13 04 of 4 0.10Down
Male accessory glands5 20 of 4 0.00Down
Virgin spermatheca2686 714 of 411.06Up
Mated spermatheca2347 1684 of 4 9.67Up
Adult carcass2088 2394 of 4 8.60Up
Larval CNS6 21 of 4 0.03Down
Larval Salivary gland16 33 of 4 0.07Down
Larval midgut209 24 of 4 0.86None
Larval tubule10 32 of 4 0.00Down
Larval hindgut11 14 of 4 0.05Down
Larval fat body18 24 of 4 0.10Down
Larval trachea54 224 of 4 0.23Down
Larval carcass26 44 of 4 0.11Down
S2 cells (growing)8 01 of 4 0.03Down
Whole fly242 254 of 4

Looking for FBgn0033065. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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