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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033072 through 18771 annotations produced 1 hits



(CG17994):

Annotation Number : CG17994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033072
Gbrowse : chr2R:2094722-2096813 (-) // 100.0 //
Probeset : 1638728_at
Accessions : protein= NP_610212;, nucleotide= NM_136368;
FlyMine data for FBgn0033072.
BDGP gene expression has embryonic in situ data for CG17994: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0033072 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 3.50Up
Head3 ± 10 of 4 5.80None
Eye1 ± 00 of 4 2.67None
Thoracicoabdominal ganglion1 ± 00 of 4 2.30None
Salivary gland2 ± 00 of 4 3.15None
Crop1 ± 00 of 4 1.70None
Midgut0 ± 00 of 4 1.30None
Tubule2 ± 00 of 4 4.00Up
Hindgut1 ± 00 of 4 2.70None
Heart1 ± 00 of 4 1.96None
Fat body2 ± 20 of 4 3.59None
Ovary0 ± 00 of 4 1.10None
Testis3 ± 10 of 4 5.40None
Male accessory glands2 ± 00 of 4 3.30None
Virgin spermatheca3 ± 10 of 4 5.56None
Mated spermatheca1 ± 00 of 4 1.70Up
Adult carcass2 ± 00 of 4 4.00None
Larval CNS1 ± 10 of 4 2.04None
Larval Salivary gland2 ± 10 of 4 4.07None
Larval midgut1 ± 00 of 4 1.67None
Larval tubule1 ± 10 of 4 2.60None
Larval hindgut1 ± 00 of 4 2.15None
Larval fat body5 ± 30 of 4 8.70None
Larval trachea2 ± 10 of 4 3.04None
Larval carcass0 ± 00 of 4 1.26None
S2 cells (growing)0 ± 00 of 4 1.07None
Whole fly0 ± 00 of 4

Looking for FBgn0033072. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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