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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033079 through 18771 annotations produced 1 hits



Flavin-containing monooxygenase 2 (Fmo-2):

Annotation Number : CG3174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033079
Gbrowse : chr2R:2529921-2532585 (-) // 100.0 //
Probeset : 1627302_at
Accessions : protein= NP_610217;, nucleotide= NM_136373;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005792 // microsome // inferred from direct assay /// 000582
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred f
FlyMine data for FBgn0033079.
BDGP gene expression has embryonic in situ data for Fmo-2: 51 pix of staining in 9 body parts.
Homophila reports that CG3174 is a close match (5e-25) to human gene FMO3;TMAU (NP_008825), a gene associated with Trimethylaminuria, 602079 (3).
VDRC has 3 RNAi stocks for FBgn0033079 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 24 of 4 0.10Down
Head192 194 of 4 1.40None
Eye95 114 of 4 0.69None
Thoracicoabdominal ganglion26 24 of 4 0.20Down
Salivary gland173 124 of 4 1.25None
Crop344 114 of 4 2.50Up
Midgut374 224 of 4 2.70Up
Tubule3229 1264 of 423.30Up
Hindgut162 54 of 4 1.20None
Heart280 174 of 4 2.02Up
Fat body486 964 of 4 3.51Up
Ovary27 24 of 4 0.20Down
Testis13 14 of 4 0.10Down
Male accessory glands35 64 of 4 0.30Down
Virgin spermatheca825 564 of 4 5.96Up
Mated spermatheca353 344 of 4 2.55Up
Adult carcass251 164 of 4 1.80Up
Larval CNS9 24 of 4 0.07Down
Larval Salivary gland30 34 of 4 0.22Down
Larval midgut81 144 of 4 0.59None
Larval tubule94 124 of 4 0.70None
Larval hindgut93 134 of 4 0.68None
Larval fat body11 00 of 4 0.10Down
Larval trachea29 14 of 4 0.21Down
Larval carcass59 114 of 4 0.43Down
S2 cells (growing)185 24 of 4 1.34None
Whole fly138 184 of 4

Looking for FBgn0033079. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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