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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033085 through 18771 annotations produced 2 hits



/// (CG15908 /// CG9410):

Annotation Number : CG9410
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033085 /// FBgn0033086
Gbrowse : chr2R:2556664-2557581 (+) // 100.0 //
Probeset : 1627034_a_at
Accessions : protein= NP_001137611; /// NP_610220; /// NP_610221; /// NP_724484; /// NP_995751;, nucleotide= NM_001144139; /// NM_136376; /// NM_136377; /// NM_165481; /// NM_206029;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
FlyMine data for FBgn0033085 /// FBgn0033086.
BioGrid reports that CG9410 interacts with CG9506 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain215 ± 54 of 4 1.40Up
Head158 ± 124 of 4 1.10None
Eye112 ± 14 of 4 0.75Down
Thoracicoabdominal ganglion190 ± 84 of 4 1.30Up
Salivary gland202 ± 94 of 4 1.35Up
Crop138 ± 24 of 4 0.90None
Midgut164 ± 34 of 4 1.10None
Tubule195 ± 34 of 4 1.30Up
Hindgut203 ± 94 of 4 1.40Up
Heart167 ± 104 of 4 1.12None
Fat body209 ± 164 of 4 1.40Up
Ovary104 ± 34 of 4 0.70Down
Testis774 ± 184 of 4 5.20Up
Male accessory glands80 ± 34 of 4 0.50Down
Virgin spermatheca111 ± 84 of 4 0.74Down
Mated spermatheca109 ± 84 of 4 0.73Down
Adult carcass193 ± 84 of 4 1.30Up
Larval CNS121 ± 134 of 4 0.81Down
Larval Salivary gland113 ± 54 of 4 0.76Down
Larval midgut111 ± 64 of 4 0.75Down
Larval tubule102 ± 54 of 4 0.70Down
Larval hindgut149 ± 74 of 4 1.00None
Larval fat body155 ± 494 of 4 1.00None
Larval trachea110 ± 94 of 4 0.74Down
Larval carcass135 ± 144 of 4 0.91None
S2 cells (growing)137 ± 24 of 4 0.92None
Whole fly149 ± 84 of 4



/// (CG15908 /// CG9410):

Annotation Number : CG15908
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033085 /// FBgn0033086
Gbrowse : chr2R:2555689-2556212 (+) // 100.0 //
Probeset : 1624431_at
Accessions : protein= NP_001137611; /// NP_610220; /// NP_610221; /// NP_724484; /// NP_995751;, nucleotide= NM_001144139; /// NM_136376; /// NM_136377; /// NM_165481; /// NM_206029;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
FlyMine data for FBgn0033085 /// FBgn0033086.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain206 ± 74 of 4 1.80Up
Head118 ± 34 of 4 1.00None
Eye117 ± 54 of 4 1.02None
Thoracicoabdominal ganglion254 ± 74 of 4 2.20Up
Salivary gland71 ± 74 of 4 0.62Down
Crop99 ± 34 of 4 0.90Down
Midgut95 ± 34 of 4 0.80Down
Tubule53 ± 14 of 4 0.50Down
Hindgut148 ± 34 of 4 1.30Up
Heart94 ± 44 of 4 0.82Down
Fat body91 ± 104 of 4 0.80Down
Ovary160 ± 34 of 4 1.40Up
Testis37 ± 34 of 4 0.30Down
Male accessory glands28 ± 21 of 4 0.20Down
Virgin spermatheca50 ± 24 of 4 0.44Down
Mated spermatheca50 ± 44 of 4 0.44Down
Adult carcass138 ± 54 of 4 1.20Up
Larval CNS114 ± 214 of 4 0.99None
Larval Salivary gland58 ± 44 of 4 0.51Down
Larval midgut64 ± 74 of 4 0.56Down
Larval tubule35 ± 14 of 4 0.30Down
Larval hindgut116 ± 124 of 4 1.02None
Larval fat body30 ± 24 of 4 0.30Down
Larval trachea81 ± 64 of 4 0.71Down
Larval carcass101 ± 114 of 4 0.89None
S2 cells (growing)124 ± 34 of 4 1.08None
Whole fly114 ± 14 of 4

Looking for FBgn0033085. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime