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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033088 through 18771 annotations produced 1 hits



(CG3271):

Annotation Number : CG3271
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033088
Gbrowse : chr2R:2561113-2562570 (+) // 100.0 //
Probeset : 1634541_a_at
Accessions : protein= NP_610223; /// NP_724485;, nucleotide= NM_136379; /// NM_165482;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0016788 // hydrolase activity
FlyMine data for FBgn0033088.
VDRC has 2 RNAi stocks for FBgn0033088 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain208 54 of 4 2.60Up
Head106 104 of 4 1.30None
Eye253 234 of 4 3.18Up
Thoracicoabdominal ganglion265 84 of 4 3.30Up
Salivary gland142 94 of 4 1.78Up
Crop71 44 of 4 0.90None
Midgut76 44 of 4 1.00None
Tubule130 84 of 4 1.60Up
Hindgut85 14 of 4 1.10Up
Heart49 34 of 4 0.62Down
Fat body30 24 of 4 0.39Down
Ovary187 24 of 4 2.40Up
Testis80 24 of 4 1.00None
Male accessory glands142 64 of 4 1.80Up
Virgin spermatheca44 34 of 4 0.56Down
Mated spermatheca56 44 of 4 0.71Down
Adult carcass41 24 of 4 0.50Down
Larval CNS148 64 of 4 1.86Up
Larval Salivary gland127 144 of 4 1.60Up
Larval midgut71 34 of 4 0.90None
Larval tubule115 34 of 4 1.40Up
Larval hindgut77 24 of 4 0.97None
Larval fat body47 34 of 4 0.60Down
Larval trachea143 74 of 4 1.80Up
Larval carcass57 34 of 4 0.72Down
S2 cells (growing)255 34 of 4 3.21Up
Whole fly79 14 of 4

Looking for FBgn0033088. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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