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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0033089 through 18771 annotations produced 1 hits



(CG17266):

Annotation Number : CG17266
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033089
Gbrowse : chr2R:2562577-2563257 (-) // 100.0 //
Probeset : 1627399_at
Accessions : protein= NP_610224;, nucleotide= NM_136380;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006457 // protein folding // inferred from elec
FlyMine data for FBgn0033089.
BioGrid reports that CG17266 interacts with CG6011 .
VDRC has 3 RNAi stocks for FBgn0033089 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 24 of 4 0.20Down
Head30 ± 14 of 4 0.30Down
Eye30 ± 24 of 4 0.28Down
Thoracicoabdominal ganglion31 ± 34 of 4 0.30Down
Salivary gland37 ± 31 of 4 0.34Down
Crop27 ± 04 of 4 0.30Down
Midgut52 ± 14 of 4 0.50Down
Tubule31 ± 34 of 4 0.30Down
Hindgut26 ± 34 of 4 0.20Down
Heart32 ± 24 of 4 0.30Down
Fat body31 ± 64 of 4 0.29Down
Ovary228 ± 24 of 4 2.10Up
Testis64 ± 24 of 4 0.60Down
Male accessory glands55 ± 54 of 4 0.50Down
Virgin spermatheca28 ± 14 of 4 0.27Down
Mated spermatheca33 ± 14 of 4 0.31Down
Adult carcass34 ± 43 of 4 0.30Down
Larval CNS181 ± 124 of 4 1.68Up
Larval Salivary gland80 ± 24 of 4 0.74Down
Larval midgut34 ± 24 of 4 0.32Down
Larval tubule52 ± 24 of 4 0.50Down
Larval hindgut49 ± 14 of 4 0.46Down
Larval fat body52 ± 44 of 4 0.50Down
Larval trachea127 ± 184 of 4 1.17None
Larval carcass51 ± 34 of 4 0.48Down
S2 cells (growing)110 ± 14 of 4 1.02None
Whole fly108 ± 54 of 4

Looking for FBgn0033089. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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